clizWhitener.h

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// clizWhitener.h   -   ClusterLizard header file - Module: Whitener

// Copyright (C) 2013, 2014 Simeon Knieling, M.Sc.
//
// This Source Code Form is subject to the terms of the Mozilla Public
// License, v. 2.0. If a copy of the MPL was not distributed with this
// file, You can obtain one at http://mozilla.org/MPL/2.0/.
//

//Whitener Class

#pragma once
#ifndef _INCLUDE_CLIZWHITENER
#define _INCLUDE_CLIZWHITENER

#include "clizSave.h"

namespace cliz
{

    struct WhitenerHandle
    {
        unsigned int    detection;
        unsigned int    valuesperrawspike;
        unsigned int    valuesperspike;
        unsigned int    w_pre;
        unsigned int    w_post;
        unsigned int    w_pre_raw;
        unsigned int    w_post_raw;
        unsigned int    smoothingCount;
    };

    class Whitener
    {
    private:
        WhitenerHandle                              handle;             //Parameter handle
        std::vector<IndicesStruct>                  indicesOut;         //Which Modules that receive output from this module need which output?
        std::vector<Save*>                          inputSaveVec;       //Input Saves
        std::vector<Save*>                          outputSaveVec;      //Output Saves
        MemoryManager                               memMan;

        arma::Mat<float>                            *whiteningMat;      //Whitening matrix

    public:
        Whitener(WhitenerHandle iHandle, std::vector<Save*>  &iInputSaveVec, std::vector<Save*> &iOutputSaveVec, std::vector<IndicesStruct> &iIndicesOut);

        void    whitenRawSpikes(float *iRawSpikes, unsigned int nspk, float *oWhiteSpikes, float *oRawSpikes);
        
        void    threadFunc();

        ~Whitener()
        {

        };
    };
}

#endif